PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_03236 FitnessBrowser__Caulo:CCNA_03236 (291 amino acids)

SeqID: CCNA_03236 FitnessBrowser__Caulo:CCNA_03236
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 130690: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_03236 FitnessBrowser__Caulo:CCNA_03236
MGGGVLMAKKSAPGPLEYLRRWQMQAWLAAVFIFLYAPLIALMAFSFNDSKRNIVWKGFT
LKYYEKLFNNSELLEAFGNSLTIAAASTVISLFLGAAVALALWRFRFPGKTAVDGAMALP
IVVPEICMGVAMLVFFAKVLPWPQGMPWPLNLGAIIIAHVSFSFPFVAVVVRARMASFNR
EMEEAARDLGAGEFRTIKDVILPHMAPSLIAGALLAFTLSLDDFVITFFTAGPDTVTFPV
KVYSMVRFSVTPEVNAASTVLIVLTVLLTAAALKLQGNPAAAAGHGAKDGK