PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_03280 FitnessBrowser__Caulo:CCNA_03280 (1146 amino acids)

SeqID: CCNA_03280 FitnessBrowser__Caulo:CCNA_03280
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Extracellular          2.00
    Cytoplasmic            2.00
    CytoplasmicMembrane    2.00
    Periplasmic            2.00
    OuterMembrane          2.00
  Final Prediction:
    Unknown

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_03280 FitnessBrowser__Caulo:CCNA_03280
MRHSEVTLDDKYVLEDGRAFITGVQALLRVLLDRKRLDRKAGLNTGGYLSGYRGSPLGGL
DQQAARIKKLLTAHDVVFQEGLNEDLAATAVWGSQQANLFPGALYDGVFGMWYGKAPGVD
RTGDVFKHANFAGTFPTGGVLAVAGDDHGCKSSTLPSQSEFAFQDFEMPVLSPADVQEVL
DYGLLGISMSRFSGLWTGMIALADTMDSGVTIDVSLDRHQIVVPEFAFPPGGLGIRQKDQ
PMEKERRMRLHKIPAALAFARANNIDRVVLGASHVKVGKARLGIVCQGQAYKDVLEAFTA
MGMTLQEAADLGVSIYKVGMPWPLEPLGLRAFAAGLETLMVIEHKRALIEPQARAALYDL
PAQARPRVIGKTDEKGGPLLSELGSLSVAEIALAIYDRLPQGPHMERAQAYLNRVSAAGV
AAVSLAADQARKPFFCSGCPHNTSTKLPEGSRALAGIGCHYMAGFNDPMTDLNTHMGGEG
LTWVGAAPFTSEKHVFQNLGDGTYNHSGSLAIRGAVAAGTNITYKLLYNDAVAMTGGQRA
ESGFTPAQITRQLAAEGVKKTVIVVDELERYQGVNDLAPGVEIFPRSDLMRVQEMLRETP
GTTVLLYDQTCATEKRRRRKRGSMPKATQRVFINPLVCEGCGDCSVKSNCVSVEPLATEF
GRKRKINQSSCNQDYSCVEGFCPSFITLEGAESAQSKKTPAALTAESTPLPEFEPLTGVR
KILFTGVGGTGVTTVASIMAMAAHIDGRAGSVVDMTGLAQKGGSVFSHVKIGKTEETIVG
GRVPAASADVLIACDLLVAASPEGLSLYAKDRTRAFGNSDFAPTADFVTSRDVRFDSGAM
ARRVKGATKTFDACPAQRLAETEFGDAIYANMIMVGFAWQRGVIPLSSRAVYRAIKLNGV
DAEANLQAFELGRRVAHDPSTLTVKEDTTPTPETMPLDALIAHRIAQLTAYQNAAYAQRY
ADKVAKVRAAETAVSGEDGALPLTRAAAVNLYKLMAYKDEYEVARLYTDGRFAAELAGTF
KGGKAKVWLAPPLLAPKGPDGKPKKIAFGGWMLDLAFPMMAKMKGLRGTALDIFGKTEER
RMERGLIASYETGLDRLAAGLKAESLPLAVKIAEVPQAIRGFGHVKEASVVTAKAAEAKL
WTQWAG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory