PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_03704 FitnessBrowser__Caulo:CCNA_03704 (443 amino acids)

SeqID: CCNA_03704 FitnessBrowser__Caulo:CCNA_03704
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_03704 FitnessBrowser__Caulo:CCNA_03704
MSLAGLKSAPGGALRGIVRAPGDKSISHRSMILGALATGTTTVEGLLEGDDVLATARAMQ
AFGARIEREGVGRWRIEGKGGFEEPVDVIDCGNAGTGVRLIMGAAAGFAMCATFTGDQSL
RGRPMGRVLDPLARMGATWLGRDKGRLPLTLKGGNLRGLNYTLPMASAQVKSAVLLAGLH
AEGGVEVIEPEATRDHTERMLRAFGAEVIVEDRKAGDKTFRHVRLPEGQKLTGTHVAVPG
DPSSAAFPLVAALIVPGSEVTVEGVMLNELRTGLFTTLQEMGADLVISNVRVASGEEVGD
ITARYSQLKGVVVPPERAPSMIDEYPILAVAAAFASGETVMRGVGEMRVKESDRISLTAN
GLKACGVQVVEEPEGFIVTGTGQPPKGGATVVTHGDHRIAMSHLILGMAAQAEVAVDEPG
MIATSFPGFADLMRGLGATLAEA