PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_0083 FitnessBrowser__PS:Dsui_0083 (332 amino acids)

SeqID: Dsui_0083 FitnessBrowser__PS:Dsui_0083
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_0083 FitnessBrowser__PS:Dsui_0083
MLTNTSILITGGTGSFGNTFVPMTLAKFNPKKIVIFSRDEMKQWEMAKKFGGDERVRFFI
GDVRDRERLYRALDGIDYVVHAAATKIVPTAEYNPFECVKTNINGAMNLIDACIDKGVKR
VVALSTDKASSPVNLYGATKLASDKLFVAGNSYAGGHDTRFAVVRYGNVMGSRGSVIPFF
MSIKDKGVLPITDERMTRFMISLEQGVELVWHAFGDMEGGEIYVKKIPSMKVTDLARAIA
PNASLEYVGIRPGEKLHEQMISEEDALYSYEYPEHFKILPAIHNWHLSPGRIKDGKKVPE
GFSYTSDNNSEWMGIEELQRWIAINQEKIGNI

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory