PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_0111 Dsui_0111 argininosuccinate lyase (461 amino acids)

SeqID: Dsui_0111 Dsui_0111 argininosuccinate lyase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600456: argininosuccinate lyase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_0111 Dsui_0111 argininosuccinate lyase
MTQQNSSYTWAGRFSEPMSDLVKRYTASVDFDQRLWRQDINGSLAHARMLAKQGIIAAAD
LADIEKGMAQIVEEIESGKFEWSLDLEDVHLNIEKRLTTLVGDAGKRLHTGRSRNDQVAT
DIRLWLRDTIDSIVELIKAFQTALLVLAEKEAATPMPGSTHLQVAQPVTFGHHLLAYFEM
TQRDKERFLDCRKRVNRLPLGAAALAGTTYPIDREFVAAQLGFDGVCENSLDAVSDRDFG
IEFCAAASLLMTHFSRLSEELVLWMNPRFGYVKIADRFCTGSSIMPQKKNPDVPELARGK
TGRVNGSLISMLTLMKGQPLAYNKDNQEDKEPLFDAADTVIDTLRIFADMMGGIEARPER
MRGALAEGFATATDLADYLVKKGLPFREAHEVVGAAVKAAETQGKDLADLTLAELQAFSP
LVQSDVATCLTIEGSLAARNHIGGTAPEQVKAAIARAKARV