PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_0609 FitnessBrowser__PS:Dsui_0609 (337 amino acids)

SeqID: Dsui_0609 FitnessBrowser__PS:Dsui_0609
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600429: probable aromatic hydrocarbon reductase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_0609 FitnessBrowser__PS:Dsui_0609
MSFSVTIEPGQHHFAAESDETILEAALRQGLTMPYGCRDGACGACKGKVLCGEVDHGKSQ
PHALSEADKAAGLTLFCCAKAKTDLTLECREVRSASDIPVKTLPSRIEKMEKVAADVMVL
HLRLPATERFQFLTGQYVDILLKDGKRRSFSLANAPHDDAFLQLHIRLVPGGLFTEHVFN
GMKERDILRLNGPHGSFFLREDSDKPMILLAGGTGFAPIKAIVEHALYTQSKRPMVIYWG
NRNKAGLYMDELPARWAAEHSHITYVPVLSEPAATDGWNGRTGLVHEAVMQDFPDLSGHQ
VYVCGAPVMVEAAKRDFTGRCGLPEAEFFADSFTFSS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory