PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_1048 FitnessBrowser__PS:Dsui_1048 (470 amino acids)

SeqID: Dsui_1048 FitnessBrowser__PS:Dsui_1048
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 121372: Glutamine synthetase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_1048 FitnessBrowser__PS:Dsui_1048
MATPQDIMKMVKENDVKFVDFRFTDTRGKEQHVGVPVSAFDEDKFESGHAFDGSSIAGWK
GIQASDMLLMPDPNTAYIDPFFDETTLILTCDVVEPADGKGYDRDPRSIAKRAEAYLKSS
GIGDTAFFGPEPEFFIFDSVEWKTDMSGTYVKIFSEEAAWSTAEKFDGGNAGHRPMVKGG
YFPVPPVDSFNDMRAQMCLLLEACGVPVEVHHHEVATAGQNEIGTVFNTLVRRADQTQIL
KYIVHNVAHQYGKTATFMPKPIVGDNGSGMHVHQSIWKDGQNLFAGNGYAGLSETALYYI
GGIIKHAKALNAITNPGTNSYKRLVPHYEAPVKLAYSAKNRSASIRVPFVQSTKARRIET
RFPDPIANPYLCFAALLMAGLDGIQNKIHPGDAADKNLYDLPPEEDAKIPTVCASLDEAL
ANLDKDREFLTRGGVFSNDWIDSFIDLKMEEVNKLRMTTHPVEFDLYYSC