PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_1122 Dsui_1122 dihydroxy-acid dehydratase (619 amino acids)

SeqID: Dsui_1122 Dsui_1122 dihydroxy-acid dehydratase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595550: dihydroxy-acid dehydratase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_1122 Dsui_1122 dihydroxy-acid dehydratase
MPAYRSRTSTHGRNMAGARALWRATGMKDGDFGKPIIAVVNSFTQFVPGHVHLKDLGQLV
AREIEAAGGIAKEFNTIAIDDGIAMGHDGMLYSLPSRDLIADSVEYMVNAHCADAMVCIS
NCDKITPGMLMAAMRVNIPTIFVSGGPMEAGKVKWEGKTIAVDLIDAMIKAGDSNCSDAE
VEEFERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGTLVATHADRKGLFLEAGRRIV
RLAQRWYEENDASVLPRSIANQKAFENAFALDVAMGGSTNTVLHLLATAQEAGVTFTMAD
IDAISRKVPCLCKVAPATQDYHIEDVHRAGGIMAILGELSRGGLIHRDTPTVHCHTLGEA
IDTYDVQRAGSQRTLEFFRAAPGGIPTQTAFSQDRRYTELDQDRSNGCIRNVAHAYSKEG
GLAVLHGNIALDGCIVKTAGVDESIWKFTGKAKVYESQDSAVTAILGGEVVAGDVVVIRY
EGPKGGPGMQEMLYPTSYLKSRGLGKECALLTDGRFSGGTSGLSIGHASPEAAEGGAIGL
VRTGDTIEIDIPGRRIHLAVSDAELEKRRAEENAKGDKAWKPTEERGRVVSKALQAYALM
ATSADKGAVRDLGQLTKSK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory