PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_1268 FitnessBrowser__PS:Dsui_1268 (249 amino acids)

SeqID: Dsui_1268 FitnessBrowser__PS:Dsui_1268
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16128794: molybdopterin synthase sulfurylase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            4.99
    CytoplasmicMembrane    4.90
    Extracellular          0.10
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_1268 FitnessBrowser__PS:Dsui_1268
MNDQQLLRYSRHILLDPIGIEGQERFLTARALVIGAGGLGSPAALYLAAAGVGTLALADG
DTVDLTNLQRQILHTEASVGRPKAESGRDALQRLNPETRVEVIARRLEGADLEAEVAKAD
VVLDCCDNFATRHAVNRACVKLGKPLVSGAAVRFDGQISVFDTRQPGAPCYHCLFPEGED
VEEVRCATMGVFAPLTGIIGTLQAAEALKLLAGCGQTLGGRLLLLDALTMEWRTVRLQKD
PGCPVCGSR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory