PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_1414 FitnessBrowser__PS:Dsui_1414 (395 amino acids)

SeqID: Dsui_1414 FitnessBrowser__PS:Dsui_1414
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599643: histidinol-phosphate aminotransferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_1414 FitnessBrowser__PS:Dsui_1414
MGKSETAAMIPFQPCTSRGGVPFRAARPIHFSLIRPAMSKFWSPLVNRLTPYVPGEQPKL
PNLVKLNTNENPYPPSPKTVAAMQAEIGHDGASLRLYPDPSADRLKEAVAAFYGEFGIGA
RQVFVGNGSDEVLAHVFMALLQHDAPLLYPDISYSFYPVYAGLYGISAETVALDGDYGID
LSAYRRANGGIIFPNPNAPTGRLLPLGEIEALLTANTESVVVVDEAYVDFGGDTAIALVN
RFPNLLVVHTLSKSRSLAGLRVGYAVGHPDLIEALERVKNSFNSYPLDRIAIAGAVAALE
DRAWFDRTRNAVIASREQLVSDLTLLGFQVLPSAANFVFARHPGRDGAELAQALRQRSII
VRHFKAPRIDQFLRITIGTDEQCGALVAALKEILG