PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_1925 FitnessBrowser__PS:Dsui_1925 (572 amino acids)

SeqID: Dsui_1925 FitnessBrowser__PS:Dsui_1925
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599890: acetolactate synthase large subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_1925 FitnessBrowser__PS:Dsui_1925
MNAPAPQAARQTDAAPAPETLTGAQIVVRLLERQGVTTVSGIPGGAILPFYDALSASEKI
RHVLARHEQGAGFIAQGMARASGQPAVCLASSGPGATNLLTAIADAKLDSIPLVAITGQV
PRSMIGTDAFQEVDTYGLSIPITKHNFLVNSAEELLEVIPRAFTLAASGRPGPVLVDIPK
DVQAQAIEVSQWPAPGGRQAPPAPDMAAIEKAAAMINAAERPILYLGGGVVHSGAAEAAV
ALAEKASLPTTMTLMALGAMPVDHPLSIHMLGMHGARYTNLLLEECDLLIAVGARFDDRA
TGKVAAFCPKAQIIHIDIDPSELDKIKNAHVGIAGDVGEVLEKLSPLVEAHLRKRWLTHM
GDLRSRFRLQRPNLEDPRSHYGLIQAVADCLDDSAAIATDVGQHQMWVAQAYPLRRPRQW
LTSGGLGTMGFGVPAALGAALAEPERTVVCFTGDGSILMNIQELATIAEAGANLKIVLMN
NDALGLVYQQQELFYGKRYFASKFAGQPDFLKIAEGFGIDTLDLDTAADPRAALRQALQR
PGPCLIHAFIDMNEKVYPMVPPGAANTDMIGG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory