PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_1942 FitnessBrowser__PS:Dsui_1942 (644 amino acids)

SeqID: Dsui_1942 FitnessBrowser__PS:Dsui_1942
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 62288348: Cytidylate kinase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_1942 FitnessBrowser__PS:Dsui_1942
MEFLDLAPFVSAGGTVRLPGSKSISNRVLLLAALAEGVTEVRDLLHSDDTERMLEALQQL
GVGVESLGGEAYRITGVGGPFPVKEAELFLGNAGTAFRPLTAALALAGGHYVLKGVARMH
ERPIGDLVDGLRQLGAEVRYLGNDGFPPLEIFPASIRAGGVLQVRGDVSSQFLTALLMAL
PLTGVETRVEVVGELISKPYIEITLATMARFGVEVQREGWQAFVVPAGVRYVSPGTVYVE
GDASSASYFLAAGAIGGGPLRVEGVGKDSIQGDVRFAEALALMGARIEMGPNWIEARAPA
SGKLQAIDLDCNHIPDAAMTLATAALFAEGTTVLRNIASWRVKETDRIAAMATELQKLGA
VVEEGPDYLKVTPVPALKPAAIDTYDDHRMAMCFSLAAFATPLRINDPKCVAKTFPDYFE
RLATVTRSVPVIAIDGPSASGKGTVAARVAAALGFGYLDSGALYRLTALAAQRAGVDWDD
EAGVAAVAAGLEVVFGEGSIRLAGEEVEGAIRTEEISQGASKVAALPAVRAALLFRQRVF
RCGAGLVGDGRDIGSVVFPDSRLKVFLTASAEVRAERRYKQLIGKGFPANMQAILLDLRE
RDRRDSERSVAPLQQNEDAVLLDTSGLTIDQAVDQVLDWYGSAS