PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_2006 FitnessBrowser__PS:Dsui_2006 (680 amino acids)

SeqID: Dsui_2006 FitnessBrowser__PS:Dsui_2006
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [14 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50283: NA_SOLUT_SYMP_3 Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 418555: Cation/acetate symporter actP]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_2006 FitnessBrowser__PS:Dsui_2006
MPTAKGFRQQLKRYYLLYTVGFLAFVAVLAFLEHLGLPPRWIGYAFLLFTILIYATIGVM
SRTADVSEYYVAGRRVPALFNGMATGADWMSAASFIGMAGTLYLTGYQGLAYIMGWTGGY
VLVALFLAPYLRKFGQYTIPDFLAVRYGGNAPRLVGVAAAIIASFVYVVAQIYGVGLITS
RFVSLQFEIGVFVGLAGILVCSFLGGMRAVTWTQVAQYVILIIAYVTPVALLSFQITSVP
VPQLVYGEVLQEVGKLEEKLFETPAEQEVRGLYRERADAYYEKIMRLPVSLAEERQRLTM
RINALKEENAPMREVVALERLRRDLPANAEEARERWDAAMHAAADRGAMPIRHAEAFPGR
SEAESSAARLNFLTLMFCLMVGTAALPHVLMRYYTTPTVKEARESVTWSLFFILLLYFTA
PAYAVFAKYEVYSTLINTPIAHLPSWVAAWGKVGLVAIEDINHDGLLQLAELSLNPDVIV
LATPEIAGLPYVISGLVAAGGLAAALSTADGLLLTIAGSLSHDVYYKIIQPRASTQWRLV
ISKSLLLVTAVLAATVAAQRPATILYMVAWAFSIAAAAFFPALVIGIFWKRANRAGAVSG
MVVGLLITVYYMVRVQFDSVPWLGLRGIGMEPWFGIQSTSAGVWGVPAGFLTIVVVSLLT
KPPSREVQDFVEQVHYPQLR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory