PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_2059 Dsui_2059 ABC-type branched-chain amino acid transport system, permease component (287 amino acids)

SeqID: Dsui_2059 Dsui_2059 ABC-type branched-chain amino acid transport system, permease component
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [8 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 79076: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_2059 Dsui_2059 ABC-type branched-chain amino acid transport system, permease component
MEWFNDFWSTYSTLVFSVGVHALLALSIWLTLSCGLLSLANAAFMGVGAYVSALLTLHLE
WSFGSVLLAGGIAPTLVALIIGAPVLRLSGVYLAMATLAFGEVVRITVLNLEITGGPEGL
NGIPLATEGWHIALILAVAVYGLARLRRSKVGRAFEAIKEDEVAARLMGINVDRYKLLAF
SLGAFIAGVAGALNAHFTFFISPREYGFENAVDILTMAVLGGTSSLIGPMLGSSILTLLP
ELLRSLQDFRSLVNGAVLVLVVLFLPKGLWESRRIRAFFKRLKGGQA