PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_2086 Dsui_2086 cytochrome c (696 amino acids)

SeqID: Dsui_2086 Dsui_2086 cytochrome c
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Extracellular                 [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15597677: hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Extracellular          5.02
    Periplasmic            4.91
    OuterMembrane          0.07
    CytoplasmicMembrane    0.00
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_2086 Dsui_2086 cytochrome c
MTHVPSVPAGAPAGALTRLWRSAAATFLLSALAAAGLGRAEAADAGQIARGEYLARLGDC
VACHTAEGGKSMAGGRELATPFGVLFSTNITPDKETGIGNYTFAQFDRAMRKGVAADGHN
LYPAMPYPSYAKMTGEDMQALYAYLMQGLAPVKQANKPTAMRWPFNQRWGLSLWNWAFLD
ATPFQPDAGKDATWNRGAYLVQGLGHCGACHTPRGIAFQEKAMSDAGSKGKHFLAGETVE
SWRALSLRGLWTVEDTALFLKTGQNRFATASGNMAEVIHHSTQHVKDEDLVAIATYLKSL
PPGEHELPAPSVPRSEVAGKVPGNLFSSRGGLAYVQFCGDCHRQDGNGVSKIFPPLAGNP
AVTAKDPATLLHITLTGWKTASTAAHPRVFTMPGFARLNDQELAELITFVRSSWGNGGEA
VTASQVKKMRAEVVKQDPKAIDNSKFETPRLADMLAKPNAEQLVRGMRLHLETKDLLPNH
VGDQLNCTSCHLNAGTVADGSPFVGVSAFFPSYAPRAGRIITLEDRINGCFKRSMNGKPL
PVESADMKAMVAYFDWMKGATKPEDKVPGRGIGKIDRSLKPDSDNGKKIYAEQCAVCHGE
NGEGLKSADGKMVYPPLWGDESFNIGAGMARTYTAAAFVKRNMPIGFHGKFPLGQGGLSD
QEALDVAEYFSHQPRPDFPEKVKDWPNGKKPEDARY