PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_2381 FitnessBrowser__PS:Dsui_2381 (358 amino acids)

SeqID: Dsui_2381 FitnessBrowser__PS:Dsui_2381
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596947: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_2381 FitnessBrowser__PS:Dsui_2381
MTTPDIDNINIAAFDPMPTPAAMLASQPLSEKAATVVRQGRQDLKNILDRKDHRLFVVVG
PCSIHDPVAGLDYARRLKALADEVSDTLLLVMRVYFEKPRTTVGWKGYINDPFMDDSFRV
DVGMAKAREFLLQVNEIGLPAGTEALDPNSPQYYGDLISWTAIGARTTESQTHREMSSGL
STPVGFKNGTDGNTEIAINAILSASKPHSFLGLNDQGQVAIVRTTGNAYGHIVLRGGGGR
PNYDTVSVSVAEQAMVKAKLIPNVVVDCSHANSLKKPELQPLVMSDVVNQIRLGNKSMVG
VMIESNIEAGNQSIPADLSQLKYGCSVTDGCVDWATTEKMIRDAATLLRDVLPERQAG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory