PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_2800 FitnessBrowser__PS:Dsui_2800 (482 amino acids)

SeqID: Dsui_2800 FitnessBrowser__PS:Dsui_2800
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [9 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 129185: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_2800 FitnessBrowser__PS:Dsui_2800
MAFLPVFLWSDLVIWLLVAALGLLAWGVARTPPLRAAWGRVLHSRTGMASLAVLALFVAV
GLLDSAHYRPRLADAPQNGQGGGVAAAPAYGVEVLSLLDALLTPLRTQVEKTYSAPLATR
AYAKEMQEVRQPDGSLVQQRDFPRLKFGGAHLGTEESAWAGDVARRLLQGYGLAALLWGG
LAIFLVGRLARRRQCSFRQSWRDLWWRPPTSTAPAWDALLLTLAGLFLLLTPLLALAPEY
HVLGTDKVGQDILYLVLKSIRTSLVIGLVTTLVTLPIGVLLGISAGYFRGWVDDLIQYLY
STLNSIPSVLLIAAAVLMMQVVIDTHPEWFATAAERADLRLLALCFILGMTSWTGLARLL
RGEALKLSQLEYIQAAQSFGVSSWRILLRHILPNVMHIVLIALVMDFSSLVMTEAVLSYL
EIGVDPTMVSFGSLINNARMELAREPMVWWSLAAAFVFMFILVLAANLFADVVRDAFDPR
AA