PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_3064 Dsui_3064 carbamoyl-phosphate synthase, large subunit (1068 amino acids)

SeqID: Dsui_3064 Dsui_3064 carbamoyl-phosphate synthase, large subunit
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599950: carbamoyl phosphate synthase large subunit [Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            4.99
    CytoplasmicMembrane    4.90
    Extracellular          0.10
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_3064 Dsui_3064 carbamoyl-phosphate synthase, large subunit
MPKRTDIKSILIIGAGPIIIGQACEFDYSGAQACKALKAEGYRVILVNSNPATIMTDPET
ADVTYIEPISWKVVEKIIEKERPDALLPTMGGQTALNCALDLAKHGVLEKFGVELIGASE
EAIDKAEDREKFKAAMTKIGLGSARSAVAHSMEEALQVQAMIGFPAIIRPSFTLGGSGGG
IAYNKEEFVTICERGLEASPTKELLIEESLIGWKEYEMEVVRDSKDNCIIICSIENLDPM
GVHTGDSITVAPAQTLTDKEYQIMRNASIAVLREIGVDTGGSNVQFAISPKDGRMIVIEM
NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELANEITGGKTPASFEPSIDYVVTKVP
RFAFEKFPTADFHLTTQMKSVGEVMAIGRTLQESLQKALRGLEVGVDGFDEKTTDREVIE
TELAEPGPERIWYVGDAFRIGMTLDEIHRLTHIDPWFLAQIEDLHLKAKSLAGRSVDSLS
REELLVLKKCGFSDKRLAKLLATTQTAVRERRHALNVRPVFKRVDTCAAEFATNTAYMYS
TYEDECEAQPSDKKKIMVLGGGPNRIGQGIEFDYCCVHAAMAMREDGYETIMVNCNPETV
STDYDTSDRLYFEPLTLEDVLEVVNVEKPVGVIVQYGGQTPLKLARDLEANGVPIIGTSP
DMIDAAEDRERFQKLLHELGLKQPPNRTARNEADALALAQEIGYPLVVRPSYVLGGRAME
IVHQQSDLERYMREAVKVSNDSPVLLDRFLNDACEVDVDALSDGDEVIIGGVMEHIEQAG
VHSGDSACSLPPYSLTKEVTDELRRQTKLMAKALNVCGLMNVQFAIQNDTVYVLEVNPRA
SRTVPFVSKATGLQLAKIAARCMAGQSLKSQGITKEVIPPYFSVKEAVFPFVKFPGVDTI
LGPEMKSTGEVMGVGTTFAEAFVKSQLAAGVKLPTGGKVFLSVKDSDKTKAVDVARDLHA
AGFTILATRGTGAAMEAAGIPVTVVNKVTEGRPHIVDMIKNNEIALIINTVDEKRQAIND
SRSIRTSGLAARVTMYTTIWGAEAAAAGIRQGGELVVYPIQALHAQIS