PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_3149 FitnessBrowser__PS:Dsui_3149 (360 amino acids)

SeqID: Dsui_3149 FitnessBrowser__PS:Dsui_3149
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_3149 FitnessBrowser__PS:Dsui_3149
MSEAKTDKPIKKRKIKLDEELLAYKGVWVFVESERGHVHPVSWELMGQGRRLADQLGVEL
CGVVMGAPGPDLEAQCRAAFAYGADRCYRIASPVLAEYRNVPFTRALTDLVNAHKPEILL
LGATTLGRDLAGSVATTLKTGLTADCTELAIDPEDRCLLSTRPTFGGSLLCTIVTLNYRP
QMATVRHRVMPMPDPQPERTGLIVDFEAGLIETDIVTKVLEFIPDDQRDKPQLPYAEIVV
SGGKGLGKAENFKHVWDLAKVLGGEVGASRAAIHAGWISADRQVGQTGKTVRPALYIAAG
ISGAIQHRVGMEGADCIIAINNDPNAPIFDFAHYAIVGDCNQVLPALGRTFAGYLAHQGS