PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_3257 FitnessBrowser__PS:Dsui_3257 (381 amino acids)

SeqID: Dsui_3257 FitnessBrowser__PS:Dsui_3257
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598993: probable aminotransferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_3257 FitnessBrowser__PS:Dsui_3257
MAFDFDTPVERRGSDSFKWGRYAGRDVLPLWVADMDFAAPPAVLEVLRQRVDHGVFGYGG
ATPEVTGSVLQALDRDYGWQVQAEWLVWLPGLVTGLNVACRGLAGPGETVLSAVPVYPPF
LSAPALSERCLATVPLHCQEGRWCWDFAALEAALQADPRPSLLLLCHPHNPVGRAWSRSE
LETVAELCGRYDVLVCSDEIHADLQLEPGVRHLPFACLDAEAARRSVTLMAPSKTYNIPG
LSCAFAVIPDSTIRRRFTRAMAGIVPHVNVLGLAACGAAYAHGEPWREALLAYLRQNRER
VVQAVAGWPGLEMVAPEATYLAWIDARQSGLEEPARAFEAAGVGLSDGREFGAPGFVRLN
FGCPGATLEAALERMGRLLRP