PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_3413 FitnessBrowser__PS:Dsui_3413 (420 amino acids)

SeqID: Dsui_3413 FitnessBrowser__PS:Dsui_3413
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 71159382: Anaerobic glycerol-3-phosphate dehydrogenase subunit C]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_3413 FitnessBrowser__PS:Dsui_3413
MQTQLADFIKDTPAGKEADAILRTCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLE
GGPVTERTRLHLDRCLTCRSCETTCPSGVKYHRLLDIGRQVVEERVPRGGLEALTRLALK
EVLPRPWLFNPAVAVGKVLKPFLPSVLGDKIPAAAGGPAKPRPTAVRQRKVLALAGCVQP
GLAPNINAAAARVLDRLGIQMIEEEKAGCCGALRFHLNAQEAALDDMRRNIDAWWPHVEA
GAEAILMTASGCGAHVKEYGHLLQDDPAYAAKAARIAELTKDAAELVLAQKEALLPLLAH
KPAAGRKVAFHSPCTLQHGQGIRGVVEELLAAAGFTLTPVADSHLCCGSAGTYSILQPEL
SKQLRDNKLSALGAGLPEVIATANIGCLTHLQSGGAPRGTPSAVPVRHWVELLEEQLPQT