PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Dsui_3444 FitnessBrowser__PS:Dsui_3444 (365 amino acids)

SeqID: Dsui_3444 FitnessBrowser__PS:Dsui_3444
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596947: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Dsui_3444 FitnessBrowser__PS:Dsui_3444
MTSLKAASHATKPVTDDVRIREIKELVPPAHVFREYPVSNRAAQTTYGARQGIHRILHGA
DDRLLVVIGPCSIHDYEAAMEYAQRLQKEAERLKDDLLVVMRVYFEKPRTTVGWKGLIND
PRMDGSFRINEGLRLARKILLDINELGLSCATEFLDTISPQYTADLIAWGAIGARTTESQ
VHRELASGLSCPVGFKNGTDGNVRIAVDAIRSASAPHHFLSVTKGGHSAIVSTAGNEDCH
VILRGGKGPNYDAASVDAACKDIAAAGLAARLMVDFSHANSSKKFERQVDVAKDVATQLA
AGDERIIGVMVESHLVEGRQDITPDKPLEYGKSVTDACIGWEDSVRVLDILARAVRERRL
VEATE