PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_0060 FitnessBrowser__Cola:Echvi_0060 (624 amino acids)

SeqID: Echvi_0060 FitnessBrowser__Cola:Echvi_0060
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [4 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_0060 FitnessBrowser__Cola:Echvi_0060
MIKWITRTIDSVILFHSIVLAYFLRFNFEWEVIHQYPVLDSGLLFMFLGVGAMLLTEKEK
WLGSRSRIGNFALVAHTVMVALMLASLACLVTEKLVLKAPFVPISVLVIGALLAYFFMSL
YRLFVKEFYGMYLKKKQPQKHIVIFGAGEAGRLSKTVLGSQVGSNQKIHAFLDDDMQKAG
GSIGGIPVYHGLDRLKTLQRDHAISDLLISIMCISPRRKKEIIEECLQLGIKVSVVPSID
EWVKGGFNVGKIRQIKIEDLLSRPEISLDNPAVFSQISDRVVMVTGAAGSIGSELCRKII
EHKPALLIMVDKAESALYDVEQEFRSGRWKSQIKPILADIRDAKKMDRIFKMYKPAIVYH
AAAYKHVPMMENYPEEAVTSNVLATKNLADLSVLHNVSQFVFVSTDKAVNPTNVMGASKR
IAEIYIQALSRYLDVEKGQVTKFAITRFGNVLGSNGSVIPLFKKQIEQGGPVMVTDPNIS
RYFMTISEACQLILEAGAMSTGNEIFIFDMGEPVKILDLAKKMIQLSDKKIGEDIKIVFT
GLREGEKLHEELLCHSEQLQITHHPKIRVVKMGDMAFSKVNYQIEFFERLLILSSDTEIV
RHIKHIVPEYVSNTSRYHVLDRLN