PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_0091 FitnessBrowser__Cola:Echvi_0091 (364 amino acids)

SeqID: Echvi_0091 FitnessBrowser__Cola:Echvi_0091
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2498933: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_0091 FitnessBrowser__Cola:Echvi_0091
MENTIKKIALNDKHIELGGKMVPFAGYHMPVRYSSDKEEHNTVRNGVGVFDVSHMGEFMV
TGPHALALIQKVTSNDAAKLVIGQAQYSCLPNETGGIVDDLLVYKMDEEKYLLVVNASNI
EKDWNWINQHNDMGAALENISDEMSLFAVQGPKAVETLQKVTPVNLDEVKFYHFTVGEFA
GKKDVIISGTGYTGAGGFEIYVKNEDALDVWNAIFEAGEAAGIKPIGLGARDTLRMEMGY
CLYGNDIDDTTSPLEAGLGWITKFTKDFINSENLKKQKEEGVTRKLVGFKFKDKGIPRAH
YPIVNEAGKQIGEVTSGTMSPSMNIGIGLGYVEKAYAKPGTEIAITVRNKNLAAVVEKLP
LLKK