PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_0150 Echvi_0150 glutamate-1-semialdehyde-2,1-aminomutase (429 amino acids)

SeqID: Echvi_0150 Echvi_0150 glutamate-1-semialdehyde-2,1-aminomutase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599283: probable aminotransferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_0150 Echvi_0150 glutamate-1-semialdehyde-2,1-aminomutase
MNIQNSKTLFSNAQNFIPGGVNSPVRAFKAVGGDPLFIKKAEGAYLFDEDDNRYIELINS
WGPMILGHNHPEINEAIVKAVENGTSFGAPTAKEIDIAELICKMVPSVEKVRMVNSGTEA
TMSAVRLARGYTGRDKFLKFEGNYHGHGDSFLIAAGSGAMTMGAPNSPGVTKGTAKDTLL
APYNDLNAVKEVLEANRDEVAAIILEPVPGNMGLVLPNEGFLQGLRKLCDEEGIVLIFDE
VMTGFRLAQGGAQEVFGVTPDLTTMGKIIGGGMPVGAYGGKKEIMDFVSPVGPVYQAGTL
SGNPIAMAAGFAMLDHLYQHPEVYQQLDQAGSKLVAGVKSSVEKLGLEYTMTHLGSMYSL
FFTKEKVVDFETAKTSDTVLFGKYFQAMLKRGVYLPPSQFESLFLSTALTDEHIDQIIDA
NEASLREIL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory