PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_0156 FitnessBrowser__Cola:Echvi_0156 (314 amino acids)

SeqID: Echvi_0156 FitnessBrowser__Cola:Echvi_0156
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 132127: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_0156 FitnessBrowser__Cola:Echvi_0156
MGKRDLLVVGELNIDLILNQIQGFPEMGSEKVAQKMDVVLGSSSAIFAANIATLGVDTAF
CGMVGKDDFGKMVQETLAAQQVDTRFIATSAQYKTGLTVVMNYDQDRANVTYCGAMEALT
MQEIPWEVAGTFKHFHLSNYFLQKGIQKDITAIFEKAKSAGMTTSLDLQVDPDDQWDFDY
ERCLPHVDIFLPNESELLSLTGKSSISEALEAIKPYANTVALKRGVKGGLVFEKGKVTEV
AAFVNDQFVDAIGAGDSFNAGFIHRFLQGADWESCLRFANLTGALNTTAAGGTGAFTSLA
AVKARAKSQFNQEI

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory