PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_0300 FitnessBrowser__Cola:Echvi_0300 (305 amino acids)

SeqID: Echvi_0300 FitnessBrowser__Cola:Echvi_0300
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118129: Sulfate/thiosulfate import ATP-binding protein cysA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_0300 FitnessBrowser__Cola:Echvi_0300
MSLEVKELSKYYGQQRALKEVSFTAEKGQVLGFLGPNGAGKSTTMKIAAGYLLPDGGDVL
VNGVSVMDHPQEVSKMIGYLPEHNPLYLEMYVREFLSFMAGLYQLKGKKAKARIDGVVEA
CGLGDEQHKKIGALSKGYRQRVGLAKALVHDPAVIILDEPTSGLDPNQLVDIRKLIKSIS
AEKTLVLSTHVMQEVEALCEKVVIIHQGNVVSQDLLANLKSDNSEMVLYLETQERLREEW
FAAMEGLGELHVLGDGYFQLKAVNPTILRKEIMELISEKSLSLLSLRQEERNLESIFRQL
TGTKE