PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_0485 FitnessBrowser__Cola:Echvi_0485 (1038 amino acids)

SeqID: Echvi_0485 FitnessBrowser__Cola:Echvi_0485
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    4.90
    Periplasmic            2.50
    Extracellular          2.50
    OuterMembrane          0.10
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_0485 FitnessBrowser__Cola:Echvi_0485
MQFKKLWMTGALVAALGGLLHAQSQNEWEDPTAVDRNKEAARAYFITYPSEEKALLGNRT
TNESFKTLDGLWKFSLVKRPQDRPTDFFEPTFKDEDWDDITVPSNWELEGYDMPVYTNVA
YPFPADPPLVDNQYNPVGTYRRTFSIPSQWDNQEVILHFGSISGYATVYVNGEEVGMTKA
AKTPAEFVITDYLKTGENTLAVQVFRWHDGSYLEDQDFWRLSGIERSVFLQAVPKLTIWD
FFVKSGLDDRYKNGVLEAAIQLRAFEGSDVQGGELSFELQDEDGKQVYSDTKAVSNGDQE
VKFSKTIGNVNKWSAEEPYLYQYTISLKDSRGRTLAAVSKKTGFRKVEIKDAQLMVNGQS
VLVKGVNRHEHHGVKGHVPDEEIMLRDIQLMKQNNINAVRMSHYPHSPRWYELCDEYGLY
VVDEANIETHGMGAEWQGRFKKDRHPAYLEAWAPAHLDRIHRLVERDKNHPSIIIWSMGN
ECGNGPVFYEAYNWMKERDDSRLVQFEQAGENEDTDIVCPMYPSIRHMQEYADATDKTRP
FIMCEYAHSMGNSTGNFQEYWDIILDSPHMQGGFIWDWVDQGLLAKDDNGKEFWAYGGDL
GGYFFQNDENFCANGLVTADRKPHPALHEVKKVYQDILFDYSPEKGLHVQNLFDFTNLDQ
YAFKWEWVEEGEVVKTGDFDVDLSADEEKYVQLNLPSVGDAETFLNVYAYTKNTEALVPA
GHEVAREQFALNEGYYFDHLEAVTGNLQVEQTEDLLTFATDKVTGAFDLKRGNFRKYTLK
DGEPWMVRSLPSPYFWRAPIDNDFGNHMPSRLGVWRSAHLGQKVLDVQVGEKSDEGIQIT
VNYELTNINVPYTVTYQIQSDGAVKVTAAMDLEGRDLPELPRYGMRMELPGQYGNLAYYG
RGPWENYSDRKHSSFIGQYNDQVENQFYWDYVRPQESGNKTDVRWLTLRNDKGQGIQIQG
IQPLSFSALDVSVEDLDPGLTKKQQHPTDIKPKNTVYLHIDWKQRGLGGDTSWGAYPHKP
YRLEDDHYEYSYVIRLVE