PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_0716 FitnessBrowser__Cola:Echvi_0716 (362 amino acids)

SeqID: Echvi_0716 FitnessBrowser__Cola:Echvi_0716
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 2498162: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_0716 FitnessBrowser__Cola:Echvi_0716
MRRLKVNVLLGIILLLWSACSEKKTGEKTTPSTDVADEQPIALVIHGGAGTIKRENMSEE
REKAYRQKLNEALEAGYAQLEAGEPALKAVMAAIKVMEDSPLFNAGKGAVFTHDGKNEMD
AAIMDGKTRNAGAVAGITTVKNPITAAYEVMVNSPHVFMVGKGAEQFAAEQQLEIVDPEY
FRDERRYKQLMRIIDAEKTQLDHSSLREMELEDPYFNDRKYGTVGAVAVDQDGNIAAATS
TGGMTNKRYGRVGDVPVIGAGTYADNATCAVSATGHGEFFIRDVVAHEIASIMRYTDKSL
AAAADEVVMKQLVEMEGSGGVIAIDSKGNIAMPFNSAGMYRGYIKEKGNPNTFIYDDEDE
GL