PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_0731 FitnessBrowser__Cola:Echvi_0731 (264 amino acids)

SeqID: Echvi_0731 FitnessBrowser__Cola:Echvi_0731
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 15600592: DgcB, Dimethylglycine catabolism[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_0731 FitnessBrowser__Cola:Echvi_0731
MSNYKVPTMAEMAASGESPEILFWVGCAGSFDDRYKAVTQAFVKILNKVGVSFAVLGPEE
TCTGDPARRAGNEFLFQMQAVANIQVMNGYNVKKVVTACPHCFNTIKNEYPALGGEYEVI
HHSQFLQSLINDGKIVMKGGGEFKGKKITFHDSCYLGRANNVYEAPREIIKALDVELVEM
KRCRTKGLCCGAGGAQMFKEPEPGNKDINVERTEEALGTGASAIAVGCPFCLTMMADGVK
NKEKESDVKVVDLAELIAKDQGLD