PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_0744 FitnessBrowser__Cola:Echvi_0744 (966 amino acids)

SeqID: Echvi_0744 FitnessBrowser__Cola:Echvi_0744
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597641: glycine cleavage system protein P2[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_0744 FitnessBrowser__Cola:Echvi_0744
MKIDLTPSVKFEDRHNGPSANDVSEMLSKIGASSIDELIDQTIPKAIQLDQPLNLPEAKS
EAAFLKDFRKMAAKNKIYKSFIGLGYYDTITPGVILRNVLENPGWYTAYTPYQAEIAQGR
LEALVNFQTMVMDLTGMELANASLLDEGTAAAEAMNMLFATRPRDKKKATKFFVDEKVFI
QTKEILKTRALPIGVTLVEGSLNELNLEDPELYGVLLQYPNAEGEAIDYKALVEKAKQHN
VTTAFSADLLALTLLTPPGEMGADVVVGTTQRFGVPMGFGGPHAAYFATKDAYKRQVPGR
IIGISVDKDGNKAYRMALQTREQHIKRERATSNICTAQVLLAVMAGMYAVYHGPKGLKDI
ALKIHGLAKLTAQGLAKLGFEQENEHYFDTLKIKVDDVKQSKIKAFALSHEMNFRYEPGY
VYLAFDEAKTMEDVQEIIEVFARTTHSSADVVDLASMVDHLSFEVSDGLRRTSDYMDHMI
FNAFHSEHEMLRYIKRLENRDLSLVHSMISLGSCTMKLNATAEMIPVTWPEFGQLHPFVP
QDQAAGYYALFQDLRNWLSEITGFAETSLQPNSGAQGEFAGLMVIRAYHESRGESHRNIA
LIPSSAHGTNPASAVMAGMKVVIVKCDDKGNIDLADLKEKAEKHKENLSSFLVTYPSTHG
VFEEAIREMCQIVHENGGQVYMDGANMNAQVGLTSPGVIGADVCHLNLHKTFCIPHGGGG
PGMGPICVAKHLEEFLPSSPLVKTGGQQPISAISAAPFGSASILPISYAYIAMMGREGLK
HATQTAILNANYIKARLGEFFPTLYTGAQGRAAHEMIVDFREFKAVGVEVEDIAKRLIDY
GFHSPTVSFPVAGTMMIEPTESESKAELDRFCDALIAIRGEIREIEEGKADAENNVLKNA
PHTAGMVMSDAWDMPYSREKAVYPLEYVKNSKFWPTVRRIDSAYGDRNLVCSCIPTEDYA
EEAAGI

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory