PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_1105 FitnessBrowser__Cola:Echvi_1105 (386 amino acids)

SeqID: Echvi_1105 FitnessBrowser__Cola:Echvi_1105
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_1105 FitnessBrowser__Cola:Echvi_1105
MAFYHRLGEIPPKRHTQFRQPDGSLYKEELVSSKGFSGIYATLYHIHNPNRVTAMGQPFP
FSWEIASDYGLQQTHLDTSAVAVTGADYLSARKILLRNHDVMMGICIPEHPQMDHYFKNA
DGDEVIFIHEGSGVLFSQFGRLAVKAGDYVVIPRTTIYRFEWEKGKVRLLIIEASNPIET
VRRYRNDVGQLLEHSPYCERDIRVPDRLVVEEEKGDYLIQIKKNGHLYPYHYEHSPLDVV
GWDGYLYPYALSIHDFEPITGRIHQPPPVHQTFQSAGFVICSFVPRLFDYHPQSIPAPYN
HSNIDSDEVLYYVDGEFMSRKGIQKGSFTLHMGGLPHGPHPGMVEKSIGATKTEETAVML
DTFRPLQLTQEALQYVDKRYPMSWTE