PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_1168 FitnessBrowser__Cola:Echvi_1168 (386 amino acids)

SeqID: Echvi_1168 FitnessBrowser__Cola:Echvi_1168
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 462590: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_1168 FitnessBrowser__Cola:Echvi_1168
MLNFEFKNPTKIIFGQGQTAKIADEIPAGAKVLMTYGGGSIKKNGIYDAVKDALKDFEVI
EFGGIPANPAYHQLLDALKIIKEEGITFMLAVGGGSVIDATKFLSSAALYDGEEPWDILA
KKIRTEEGLPFGTVLTIPATGSESNSGAVISNHQTGEKFSMGGPGLFPQFSLLDPTVIRT
LPQRQLANGIMDAFSHALEQYMTYPVKAGLQDRFAESIMQTLIEVGPQVMKDPSDYDAAG
DFMWCCTMALNGLIQKGVPTDWAIHAMGHELTALYGIDHARTLAIVAGSHYRYNLDRKKA
KLAQYAERVWGIVDGTAEEKALAGIKKTEAFIQSLGIETQLSAYTDTYKTAAKEIADRFT
SRGWTGLGEHKDLSPADVEKIVEMAY