PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_1279 FitnessBrowser__Cola:Echvi_1279 (500 amino acids)

SeqID: Echvi_1279 FitnessBrowser__Cola:Echvi_1279
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16077994: glycerol kinase [Bacillus subtilis subsp. subtilis str. 168]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_1279 FitnessBrowser__Cola:Echvi_1279
MDSNKQFILSIDQGTSGTKALVFDAQGKQVAKATVPLKTHYLDGGLVEQDPEDIYQNVLK
AVGICLADFQFQGHPLDAITSCGISNQRETFLLWDKNGAPLYQAVVWQCKRSIGVCDRLK
AAGLEPLIKDKTGLIIDPYFSGTKLIWLYENDPAIATAIDAGEAYFGTVDTWLLYRLTEG
NHYLTDFTNASRTLFFNLDTLDWDRELLDNMGLSGLQLPAVRPSSAEFGVTDFEGLLDAP
LPIFAMIGDSHAAAFGEACFEPGTAKATMGTGCSVLMNVGDERKSSGHGMVSTICWSTEA
QVSYALEGVIVTCGATIEWLKNELGLIQDSRETEAMAKAVTSNQGVYLVPAFSGLGAPHW
DMKRKASLVGMTFDSGKNHIVRAALESIPYQIKDVISAMEEDAQLDLEALNVDGGITANG
FVIDFLADLLEKPVARVGIADVSALGAAYLAGLKAGVFKDLAHLQQLQQKQQTVPNGPAD
SIKAAYAGWQRAVKGNTDNS