PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_1450 FitnessBrowser__Cola:Echvi_1450 (451 amino acids)

SeqID: Echvi_1450 FitnessBrowser__Cola:Echvi_1450
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_1450 FitnessBrowser__Cola:Echvi_1450
MKKNDVSIIGAGLIGSLLGIYLQKRGLDVSIYEKRPDLRDKKYAPAGRSINMALSDRGWK
ALDKIGLREMVAPYVIPMYGRRVHDEHGETSFLPYGKENQAIYSISRGKFNHMLVDEAER
YGAKMNFNHSCEEISIADTAIKVVLPDGTQEYRETDVIIGADGAYSSLRDAMQRQTRLNY
KQEYISHGYKELTIPPTAEGEFAMDPNALHIWPRGQFMLIALPNPDKSFTCTLFLPFEGG
KVCFDKINDEEDLESVFKTYFADAFALMPDLNKEYFGNPTSSLINVECFPWLANKSMLIG
DACHAMVPFFGQGMNCGFEDCFILDGLIEKYGTTSWELVFEKFQKVRKPDTDAISEMARN
NFTEMRDSVANPRFLVRKKIEAKLHELYPTEWIPLYTMVTFSDMKYADAYAQGKLQDEVM
DKVMEDPMIMQNWQQVDYGAIISQIETARMV