PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_1571 FitnessBrowser__Cola:Echvi_1571 (817 amino acids)

SeqID: Echvi_1571 FitnessBrowser__Cola:Echvi_1571
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_1571 FitnessBrowser__Cola:Echvi_1571
MNHKHFFAAIFIFLTQTSLILAQSSSGKLSKDQNTYRITAGNKTLQLQFHSPEVFRVKTF
WGEEPEEHFSYMLKQQAFDLLPVQTTQKEGTFVFDTGRLLVKVDEFSLNLAVYDTQGNLL
SGEDVSDVDGGAYQDDRVVGAIKTLQPDEHFFGFGERMDFLDRRGKEVDLNVGRGLGRPH
IIGAYNVLEANYAPVPFFMSTKGYGIFFHNSYATHWDLGSESNEHLSFEAEGGELDYFFM
YGPDFSKLLYHYTGLTGRSPLLPRFAHGLQVGTYSGGTWGHEEMTSTHYVVELARKYREK
GIPFDVLHLDSTWRMFGENGGSGATTFEWRETFKDPASMFDSLYAMDINMVGLHLRPRFD
NGKQLDLLNQAREQGFVYPEEDNPGEFVNFFDEEAVDWWWENGVMRIAEIGAMFLKTDEG
SAFGRKANESDKTGPRTEEARRLHNAFPVAYAKAPYEKFKAYNGMRGMNHTREGYAGIQR
YPFIWAGDWPSEWQYYGPVIKAGINIGLSGVGYWSHNMGGFEHQADPELFSRWVQFGMFS
PVAHVFGMDHPGYKEPWNYGAKAEEIFTQYDKLRYRLIPYIYTTAFQQYQSGKPIMRALV
LEHQDDYNTYTVDDQYYFGDHMIVCPVLTKEAQTRTVYLPEGTWYDYWDGTQYEGKQYYN
IVTPLEELPIFVKAGAIIPMQDEVAYDNKEAFGTITLDIFPGGTSEYRLFEDDGVSEKYM
EGHYAETLFRATSDDQGMEISVGKSEGDYRPGARSYVLKIHTDIQPEAVQLNGDALQPLD
ATAIRAGEAGWAYDAEANVLWAAGEKADDEEIQFHVR