PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_1589 FitnessBrowser__Cola:Echvi_1589 (424 amino acids)

SeqID: Echvi_1589 FitnessBrowser__Cola:Echvi_1589
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596819: probable hydrolase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            6.49
    CytoplasmicMembrane    3.24
    OuterMembrane          0.14
    Extracellular          0.14
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_1589 FitnessBrowser__Cola:Echvi_1589
MTKAIFAATVLLFLGIFQLTSAQQPYAGVVQSIDIQDYQGKKFTFTALTKYKSSNQMIGF
AAYYDDQGRFLANHLGDGPAPMEGREWQMLTLSGKINKKAAKLLVGVLCQGKGAFSLDDM
TLSIKGQPNDSLLLVNGNLEQHEVGVSAFISLNKDDSISITPSPLKKDNHILKLITNEES
TAIGSNKNAGKRVNANGVALYYETYGKGDPLLLLHGADMSIASFNRIIPILAKHYKVIAL
DTRGHGQSSEDGKKLTYELYAEDVNAFLDELGLEAVNVLGWSDGGNTGLILAMNHPDKVK
SLAAMAAVLYNDKSSVDPQVNKILSKQIKALENGALTDREAFSLRVKKSLLTEPNISPSS
LSKITCPALIMAGENDYVKEAHTKLIADHISDATLVTFKDTGHNAPLEIPKKFSEIVVNF
LKGN