PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_1690 FitnessBrowser__Cola:Echvi_1690 (344 amino acids)

SeqID: Echvi_1690 FitnessBrowser__Cola:Echvi_1690
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 132528: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_1690 FitnessBrowser__Cola:Echvi_1690
MSVIGGVMFHAVGASFAALCYTPQKKVVSWSWQTYWLAQAFFCWFLLPIIGAWLTIPELM
KVLDEAPKDAMWKAFGLGMAYGVGGTAFGIAIRYIGFSLTYAISIGISCVVGTLLPPLVK
GELAAVLQQEGSGWIVTGMVLGVLGIALCGLAGRYKELDLAKLEIGAQSSFSVSKGLPLC
ILAGVLSALYGFSIDQGQPIADVAVKYGAGDFQSNVVYIFSNTGAFLVTLFYCLYLHRKQ
RTFREFTRKAKAPLTKNYLLAIMTGMMWYSQFFFYGLGHVRMGDYKFTSWAVHMIMLVMF
STVAGLAMKEWTHAKGKTVYALVLALAVLLAAVLALTVGNAIGA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory