PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_1698 FitnessBrowser__Cola:Echvi_1698 (1080 amino acids)

SeqID: Echvi_1698 FitnessBrowser__Cola:Echvi_1698
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.50
    OuterMembrane          2.50
    Periplasmic            2.50
    Extracellular          2.50
    Cytoplasmic            0.00
  Final Prediction:
    Unknown

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_1698 FitnessBrowser__Cola:Echvi_1698
MRNVFCIAFVIFLSGHALFAQTVTGEPAAIPHRPEKFHLNPWEDPLITSLNRMPARTTAY
SYKDAETAKIGDREESRIQLLNGDWDFHFAMNMKEAPSDFYRSRVTGWDKIEVPSNWELK
GYDKPIYKSAVYPFRPINPPYVPEDYNGVGSYQRTFELEENWEDMNITLHFGAVSSAFKV
WLNGEFVGYGEDSFLPSEFNITPYLRSGENVLSVQVLRWSDGSYLEDQDHWRLSGIQREV
FLMAEPKLRVYDFHWQATLAEDYTNATFSLRPKVENLTGERVPDSKLTAQLFDAEGKPVF
ATPLEMAVEDILNESYPRLDNVKFGLLEATVENPHLWSDEHPYLYTLVIGLEGAKGQLLE
AKSCKVGFRDIRFDPETSKLLINGKETYIYGVNRHDHHPVRGKALTRQDIEEDVKTIKQF
NFNTIRTSHYPNDPYFYELCDEYGILVIDEANHETHGIGGKLSNDTQWTHAYMERVSRMV
QRDKNHPSIIFWSLGNEAGRGPNHAAMAAWVHDVDITRPVHYEPAQGNHRAEGYIPPNHP
DYPKDHAHRIQVPTDQPYVDMVSRFYPGIFTPDLLVNQHADHRPIVFIEYSHSMGNSTGN
MKELWDKFRSLPQVIGGCIWDFKDQGLLKQTDDGEAFYAYGGDFDEERHDGNFCINGIVA
SDGRPKAAMYECKWVYQPVEMTWEDSTEMTVRIHNRHADKSLEDYLFELSLLQNGERVNR
RDLPNLALAAGEDTVINLKPYLPDLQPGDEYLAHLTFSLSEEELWAGKGHEVAQQQFQVQ
KGNSPEFPAPRQAFEVEESVTNILVKGEGFQVAFGKSTGALESYQLAGEEQISQPMALSF
SRPLTDNDRKGWKPHEKLKVWYEATPKLSDMSSSKEEDGSIEVTSKYALIDGKAEATVVY
TVLAGGVVKVDYTLIPLDDLPNLPKVGMHLGIRREYDQIRWYGKGPVENYIDKNHGFMAG
IYQQPIDQFMEPYVMPQENGNRTDVRWMELTDKSGENGLNITADSLLSMSAWPFTAENIN
AAEHTYELDDAGFITVNIDLAQMGVGGNDSWSDVAQPLQQYQLPAKPYRYSYYIRAKRKD