PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_2143 FitnessBrowser__Cola:Echvi_2143 (1036 amino acids)

SeqID: Echvi_2143 FitnessBrowser__Cola:Echvi_2143
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_2143 FitnessBrowser__Cola:Echvi_2143
MKSIITSLFCAFICVIKVSGQDRKADPIFENPHVQEENRLPMRASYFPYENEALAEKGEK
AASDRFFDLNGTWKFFWTDHYTKLPKDFYATGFDDAAWDDFQVPANWEFNGYGTPIYVNH
PFEFAVDNPNPPFIENEKNPAGVYRRKISLPDGWEDQQVFIHLGAVKSAFRLYVNGVYVG
LGEDSKLESEFELTDYVQPGENLITIEVRRWHDGSYLEAQDFWRISGIERDVYLYSRPKV
HFYDLFVKSPLTNSYRDGKLDVTVDLWNRTDEQQGENTVMAKLLDPNGNVVFEQTQATIG
LKRKQGKTVLNFATEIPSVKAWSAETPTLYQLELVLANAAGEPLEVVRQNVGFRTYEVVG
NQFLVNGKAVLFKGVNRHESHPETHHVITKEQMETDVRIMKELNMNAVRLSHYPNDPYWY
ELCDKYGFYVIDEANIESHGMYYSPERTLGNAPEWLHAHMLRIKRMVFRDKNHPSVVAWS
MGNEAGNGYNFYKAYEWIKAYDPSRPVQYERSTYEWNTDIIVPQYPHPNSMIRYAESNPK
RPYIMSEYAHAMGNSMGNFREYWEVIKAYPMLQGGYIWDWVDQGIYKEIDGKRVFGYGGD
WGPEGTPSDDNFLINGVIMADRRWNPHAYEVRRVHQEVSFELTEDDRLEIFNEYFFRDLS
NYTFEAILLKNGEVIKRASIGTFALAPRQHTVVDLPFGLVRDESAEYRLQVEGRIVQEEG
RMAPKTLLAEAEFALTDPVLKKFDPQAADVEVREEAGKLWISNKKFSVFFNVATGQFHDY
KVGKNTLIVDGPSLSLFRPLVDNDFGGGRGSKLDYQHGKVTSLQKLEHQAAADGTYQVKA
IYEVLGGDASFEQVYRFDDGGKIRVDNTFKAIKGDHDYLLKIGTDLKLPGALDQFKWYGR
GPWESYADRKYSAQVGLYEGSVMEQYHPYVRPQESGNKTDVRWASVSKSQNEGLMIYALE
DLLNVSALPYGIDQLYPGKEKQNIHSGELEPNGYTNLHVDLEQTGVAGINSWGSIALEAY
RVSFKDYAFSYVIAPF