PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_2301 FitnessBrowser__Cola:Echvi_2301 (2214 amino acids)

SeqID: Echvi_2301 FitnessBrowser__Cola:Echvi_2301
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 32700083: Mycocerosic acid synthase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_2301 FitnessBrowser__Cola:Echvi_2301
MTIVDLFKEQAIIASSKPAISYGGDQISYQRLEDNSNQLAHLMIEKGVSPQDTVGLCVHR
STEMMVAILAILKCGAAYVPIAPEFPEERKKFICEAAEVKLMITDQGDLLETLAGIPLLD
IRENISSAYPILSPSVNFSTDNTAYILFTSGSTGEPKGVCMPHKALVNLLLWQKKQFNKH
VGVNTLQFSKFTFDVSFQEIFSTLTTGGILHLLDEETVKDPFALLQLMEEKQINRLFLPF
VSLQSLAHTAVAHQLYPKTLEAVITAGEQLKITEQITAFFSQLDRATLYNQYGPTEAHVV
SQLTLNPENTSSWPALPSIGYAIDNTELYVLDQNEQPVPQGSEGELYITGDCLASGYLKQ
PALTQEKFKFLDSIKGKPSLRAYKTGDIAKISAAGEVIFLGRRDDQVKIRGHRIELGEVE
AVLGKYPAIYQVAVQAKMYEDGQKYLVAYYIPAPNQQPTQKQLIEHLAQSLPEYMIPAIF
FQMEAFPKTSSGKIDRKSLPDPINKREKIEAPIVPAKTTLEKKLAKYFQQVLHFDRIGIS
DNFFEFGGNSLLAQKLSNDIRLALGLTVPVTSIYQHPTIQALTAHLSQDGSTAPGTNVAT
RTPAQKAVAIVGMTGRFPGADDIDTFWKNLVEGKETVTTFEEAALDPWIAEAVKKDENYV
KARGILKDADKFDPNFFGITPHQAALMDPQQRLFLELAWELLEKTSPLHPTPSYKTGVFA
GTNNNTYYQKNLLSNPDLIEQNGALQVMTLNEKDYIATRTAYQFDLKGPAISVYSACSTS
LLAIAQAVQSIRTGQCQMAIAGGSTITSPINSGHLYQEGAIFSKDSHCKPFDASASGTLF
SDGAAAIMLKDLDMAIQDGDRIYATIKGIGINNDGNAKGSFSAPSIQGQADVIKAALEDG
ELHPSSISYVEAHGTATPLGDPIEIEGLKLAFGKHEKHRFCGIGSVKSNFGHLTAAAGVT
GLIKTVLSIYHQKIPATVGFRELNPQIDLKDTPFYINGATTAWQAEFPRRAGVSSFGIGG
TNVHVILEEYPQVQETSDAPTSPYHLLCFSAKTANSLELYKDKLLQLVRSNPTMNLADLC
YSINLKPHQFIHRAYLTFKDSADLLSQLVRKNNTTTRQKTVKQLPQNTVFVFPGQGAQYL
NMGKDLFESAPAFREALTQCANLFDKLLDRPLLDIICPAAETAEAEALLKNTRYTQPAIF
AIEYALAKLWMAWGISPSAMVGHSIGEFVAAHLAGVFSLEDVTRLVAKRGQLVAALPGGD
MLSVRAPHSKIEHLIEGDISLAAINSPNLCVLAGPSEAIAHISSLLDQENILHKKLFTSH
AFHSSMMDPVLDDFGKEVAKTNMSAPSIPIVSTVTTKPLTDQEATSVPYWTAHLRKAVCF
SPAMEHLLEEDPNTIFVEIGPGNVLSTLIKQHQQARNAVTVHSTNRQSDKNHYQELLGNL
GEITLSGGKPDWHRFYAGQKRIRLEEVPTYAFDRKRCWIDPPVKAPISQQPAQNTPIING
KKTTTPMRTEVLRKKAVDVLERLSGLDIDHQPGDSSFLELGLDSLLLTQLSFALKKEFGV
PLSFRQLNSQVNTVNALVNFLDEALPADQFQPAAEPSPIPSPTTPLAENENRQAVPSHTT
YPSANHHSAIGLIGQQLELLSKQLALLQGSAVPAAAVSQQEPNTHLNGHAPAAPPSPAKK
PAVTLSKEDAENLKKPFGATARIDKNGQSLPEKQQNFIEAFTKKYTSKTASSKAYTQQNR
SHMADPRVVSGFNPSIKETVYSLVVNRSKGSRIWDIDGNEYLDILNGFGSILFGHKPDFI
DEALKEQIEKGYEIGPQHELSGAVCKLICDITGHDRAALCNTGSEAVMGALRIARTITQR
SLVVAFNGSYHGIFDEVIVRGTKSLKSFPAAAGIMAESVENILILDYGTAETLRIIEERK
DEIAAVLVEPVQSRRPEFQPVDFLKKVREITAAVGSALIFDEVITGFRMHPQGAQGIFGI
KADLATYGKVVGGGLPIGVIAGKAEFMDALDGGHWQYGDASVPEIDVTYFAGTFVRHPLA
LATAKASLEYIQQDDGQLQQNLAAKVQRLADGLNGFFEEHNIPAYVANFGSLWKIKFKQE
LPYTELLFATFREQGLHIYDGFPCFATGAYQDEDTDLILTVIKSGFQQLASATFWDALVP
GLSEGFQASPDVLSKDQPPVPGAKLGKTPEGKAAWFVPDPERPGKYLELAFKTA