PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_2504 FitnessBrowser__Cola:Echvi_2504 (469 amino acids)

SeqID: Echvi_2504 FitnessBrowser__Cola:Echvi_2504
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16129225: component I of anthranilate synthase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_2504 FitnessBrowser__Cola:Echvi_2504
MDTRQHFKINTRYKKLLADTITPVSIYLQVRDKFKNPILLESSDYHGQDNSYSYICFNPM
ATFSFDGKTISETFPEEEKHQFDLKEGEKLVDKLKAFSSRFEEEANDFKFITNGLFGYMQ
YDTVGSFEDITLENTKESNVPQAFYAVYKNVIVVDHFKNELHIFDYHVNGEDDRVREIET
LLNNRNIPTYSFKLDGEETSNYTDNQFLDILRQGREHCFKGDVFQIVLSRCFTTGFKGDE
FNVYRALRSVNPSPYLFYFDYGSYKVFGSSPEAQIVVKGRKATIYPIAGTFKRTGNDLAD
AELATKLYDDPKENSEHVMLVDLARNDLSRSSEKVEVEVFKEIQYYSHVIHLVSKVTGVL
PETANPLQLVADTFPAGTLSGAPKYRAMEIIDKLENTSRKFYGGAIGFLGFNGDFNHAIL
IRSFVSENNRLRFQAGAGVVAKSSIESELQEVTNKLQALRVALKAAEQV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory