PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_2806 FitnessBrowser__Cola:Echvi_2806 (498 amino acids)

SeqID: Echvi_2806 FitnessBrowser__Cola:Echvi_2806
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 547728: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_2806 FitnessBrowser__Cola:Echvi_2806
MNLYIKPIMLFTVLVSITSCSPNTREKKMAVQKSFDEQFRPQYHFSPPQQWMNDPNGMVY
LDGEYHLFYQHYPDSNVWGPMHWGHAVSEDLLHWDHLPIALYPDSLGYIFSGSAVIDHGN
TSGLGKNGQDPMVAIFTYHHDENGQSQGIAFSNDKGRSWTKYRNNPVLESPGIPDFRDPK
VSWYDRGNGSGKWIMTLAVKDKISFYSSPNLIDWTHESDFNPEWAAYGGVWECPDLFPLK
TNSGNEKWMLLVSINPGGPNGGSATQYFIGNFDGQNYTAEGESIKWLDYGTDNYAGVTWS
NIPPEDGRRLFIGWMSNWQYANIVPTTEWRSANTIPRELALITDHGVERVASRPIKELEQ
LRQTTEIIQGSTHALKDPLFELELEKESGESARITLKNELGEKVMITFEDNQLIFDRTES
GKISFEEGFGKRITAPITDITIETIRMYADRSSLEIFINDGALVMTEIIFPNAPYSQLET
DGFQKKGKIHYLTSIWNH