PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_2807 FitnessBrowser__Cola:Echvi_2807 (548 amino acids)

SeqID: Echvi_2807 FitnessBrowser__Cola:Echvi_2807
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 59802963: Sucrose-6-phosphate hydrolase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            6.49
    CytoplasmicMembrane    3.24
    OuterMembrane          0.14
    Extracellular          0.14
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_2807 FitnessBrowser__Cola:Echvi_2807
MIKHPQNILLVVLLLLTCHFTVLASEIELKITKRYLNFPISGQEARHKMTFQSEGQPELN
IVIRLAAGEPDYWVFKDVSNLIGKTLTISYEGNQAGLSKIYQADEIAGADSLYQEQNRPQ
FHFTTRRGWINDPNGLLYYDGEYHLFYQHNPYEREWENMHWGHAVSNDLIHWKELPDALY
PDELGTMFSGSAVIDDQNTAGWNSGSTPAMVAAYTAANRDRQTQGIAYSLDKGKTFTKYE
GNPVIDSKEKWNSIDTRDPKVFWYEPGNHWVMVLNERDGHSIYNSSDLKNWEYQSHTTGF
WECPELFELPVDGNTDEMHWVMYGASGTYMLGEFNGKTFTPTTGKHHYITGSIYAAQTFT
NVPNGRRIQMGWGQISHPGMPFTGMMMLPTELTLRTTKDGPRLFNEPVKETENLFIPIGQ
WRDLTAEEANKILEAHSAKSTLRIRTRIKLSHATSAGISLSGQRILNYDLNYNKLNGAFY
SPNDPTEMGISADIYIDKTSIEIFVDDGAFTVVMPRETVEKNNEHLRFWGNNISIQSLEI
LDVASIWK