PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_2842 FitnessBrowser__Cola:Echvi_2842 (808 amino acids)

SeqID: Echvi_2842 FitnessBrowser__Cola:Echvi_2842
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_2842 FitnessBrowser__Cola:Echvi_2842
MTTVATSVNRAQNQSAGKVMSWEQTPHGIAGITDKAYFNICLYTAKIVRVQVSRTVPFTP
NPYSVVASPEETPVNLHEEADFLILETKDLKIVLNKNEWALTYYDQNGNLLNQDDPAFGV
SWLGTEVTNYKKLQPHEKFIGLGEKTGGIDRAGQAFVNWNTDYFAYGVNDDPLYMSIPFY
IGIHQELAYGIFFDNTHKTTFNFGASNRRFSYFSADDGDMDYYFFQGDSVSEIIGGYTSL
TGKLALPPKWALGFQQCRYSYYPESEVFTLAKTFRDKDMPADVIYLDIHHMKKYKVFTFD
GEKFPNPKAMIKALNAKGFRVVVIMDPGIKVEKDYLPYEEGMDQDLFLKYPDGETYEGQV
WPGWCAFPDFTAAKTREWWAEKMAFYTDAGVDGFWTDMNEPASWGQHTPNLINFDYEGEQ
VSHRKARNIYGMQMARAAQNGASTNGQERPFILTRAGFSGIQRFAAAWTGDNVASEEHML
AGIRLVNSLGISGVSFAGYDVGGFCGEASKSLFARWMSIAAFAPLYRAHSMINSNDAEPW
AFGEEVEEISKNYLKLRYKMLPLWYSAFYKSTQDGLPVAKSLAIDYCFDDHVYDARFQNQ
YICCDALLVVPVESHKEITKAYLPEGQWYYLYNDDSYKGAQEIYVDTPINYLPVFVKGGS
ILPLQSPVSHTAEQHDGILRLHVYKGEGTSSYIHYEDDGVTLDYQKGKHHKRTITLDSDQ
QELVLSTVEGDFTSSFTALQVYFHGFSVGTATINGNQASVHREQLAFLQPITDFDPLPDN
RLPYYEIEEIPVVTVPYDRDKITVIFDQ