PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_2939 FitnessBrowser__Cola:Echvi_2939 (285 amino acids)

SeqID: Echvi_2939 FitnessBrowser__Cola:Echvi_2939
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595515: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_2939 FitnessBrowser__Cola:Echvi_2939
MKLLRFGNPGEEKPGIEKANGIRIDCSAFGEDWTEDFLTQDGLNRLTTWLESNEAKCPEI
SSEVRLGPPIKRPSKIICIGLNYKLHAKETGAEVPKQPIIFMKSTTSLSGPNDDIIIPRN
SEKTDWEVELAVMIGKKASYVDKENAMDYVAGYCLLNDVSERDFQLSHGGQWVKGKSNDT
FSPLGPYLVTKDEIKDPQHLRLWLKHNGKMLQDSNTSDMVFDIPTLVSHLSNYMTLLPGD
IISTGTPSGVGMGLTPPTYLKEGDVVELGIDGLGTSRQKAVNYKG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory