PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_3063 FitnessBrowser__Cola:Echvi_3063 (253 amino acids)

SeqID: Echvi_3063 FitnessBrowser__Cola:Echvi_3063
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16129638: component of SufBCD complex, ATP-binding component of ABC superfamily [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_3063 FitnessBrowser__Cola:Echvi_3063
MLSIKNLHASIEGTPILKGINLEIKPGEVHAIMGPNGSGKSTLASVLAGREEYEVTDGEV
TFNGKDLLEMNPEDRAREGVFLAFQYPVEIPGVSTTNFLRTAVNQVREYRGQEALDAVKF
LSLMKEKMKLVEIDQKLMSRALNEGFSGGEKKRNEIFQMAMLEPTLSILDETDSGLDIDA
LKIVSNGVNQLKSKDNATIVVTHYQRLLDYIVPDYVHVLYKGRIVKSGSKELALDLEENG
YDWIKADVDGASV