PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_3167 Echvi_3167 ribose-phosphate pyrophosphokinase (297 amino acids)

SeqID: Echvi_3167 Echvi_3167 ribose-phosphate pyrophosphokinase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 67466690: Ribose-phosphate pyrophosphokinase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_3167 Echvi_3167 ribose-phosphate pyrophosphokinase
MKTILFSLPGNEKLTELMATKMDAEVGKATLRNFPDGESYTRILSDVKDKCVVLVCTLHE
PDEKLLPLYFLSHTAKSLGAMCTCLVAPYLAYMRQDKVFNEGEGVTSGFFGKLISGFADS
ITTVDPHLHRISSLGEVYQIPNKVIHAADAISDWIKENIENPVLIGPDSESEQWVSEVAK
NAGAPFIVLQKMRHGDRDVEVSVPDVDIYKDATPILVDDIISTARTMIETVQHLKKAGMK
PPICVGIHAVFSGNSYKDLLGSGVEKIVTCNTIPHPSNGIDLSDIMAKEVKKLMHQI

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory