PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_3321 FitnessBrowser__Cola:Echvi_3321 (820 amino acids)

SeqID: Echvi_3321 FitnessBrowser__Cola:Echvi_3321
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    4.90
    Periplasmic            2.50
    Extracellular          2.50
    OuterMembrane          0.10
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_3321 FitnessBrowser__Cola:Echvi_3321
MRFRSILICLLLIGSICSFSHAQRVRKSWPLKEDWRFSKGEQEEAYQIDFDDREWESVQV
PHDWAIYGPFDESNDLQIVAVTQNGEKVATKKTGRTGGLPYMGVGWYRRAFEVPGFDPEK
QRVKLIFDGAMSEAQVYVNGEKVGFWPYGYNSFYFDVTDFLHADGTKNQLAVRLENKPQS
SRWYPGAGLYRNVHVLVTPKIHVPVWGTFVTTPYVSEEYASVNIKTELEHVSEGTDISIE
TSILDLSGKVVAKKKNVQRLNHGRPLEQFLTVDHPELWSPESPHLYVAKSVISIEGREID
EFTTRFGIRKIEFIADKGFFLNGQRRKFQGVNLHHDLGPLGAAVNRSAIKRQLQLMKDMG
ADAIRTSHNMPAPELVELCDEMGLMVMVESFDEWDVAKCKNGYHRFFDDWAEKDLVNMVR
HYRNHPSVVMWSIGNEVPTQCSADGYQVAKFLQDICHREDPTRLVTAGMDQISCVLDNGF
AAMIDVTGFNYRTHRYEEGYQKLPHSLVLGSETGSTVSSRGVYHFPVEKGAQVIHENQQS
SAYGLEYCSWSNLPEDDFALADDFDWTLGQFVWTGFDYLGEPTPYDTDAWPNHSSMFGIV
DLAGIPKDRYYLYKSVWKPEEETLHILPHWNWEGREGQKTPLFVYTNYPSAELFINGESQ
GKQTKHKEGTLQERYRLMWMDAIYEPGEVKVVAYDSLGKKAAEKILHTAGKPHHIELVPE
NKRIAVEGDELAFIRVQVVDKEGRVCPTDQRSLSFDVAGAGAFRAVANGDPGSLELFHEP
QMKVFNGQLTLIVSAKEAGNIHIKATAKGLKNGETIMEAY