PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_3848 Echvi_3848 Ornithine/acetylornithine aminotransferase (381 amino acids)

SeqID: Echvi_3848 Echvi_3848 Ornithine/acetylornithine aminotransferase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 39932236: Taurine--pyruvate aminotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_3848 Echvi_3848 Ornithine/acetylornithine aminotransferase
MKPFDVYPLIDVTPVKASGSTIWDDQGNEYLDLYGGHAVISIGHSHPHYTKRIKEQLDNI
AFYSNSVQIPIQKELATKLGQLSGYPDYDLFLCNSGAEANENALKLASFETGKKGFIAFT
KGFHGRTSGAVALTDNPKIIAPFNAHEGVHILPFNDLEAVEKQLATGTIAGVIVEGIQGV
GGIQVPDPAFLLGLSALTKQYGAKLILDEVQSGYARSGKFFAHQWVEGLKPDLITVAKGM
GNGFPIGGVLISPEFKASHGLLGTTFGGNHLACAAALAVLEVIDEENLITAAAENGKAIM
AALEKVAGVTEVRGKGLMIGFDLATEAGPVRAALIHEHKIFTGSAGGKHTIRLLPPLNIE
PKALTLFLEKLETVLNVKQST

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory